IIT Publications Search

Publications
2024
Marzi M.J., Rubolino C., D'Onghia M., Tordonato C., Giuliani B., Nicassio F.
AEGEAN AWARD: Canonical and non-canonical Target-Directed MicroRNA Degradation controls cell fitness and transcriptional plasticity in breast cancer
5th International Aegean Conference on the Long and the Short of Non-Coding RNAs
Poster Conference
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
DOI 10.1093/bib/bbae001
2024
Kumar N.H., Kluever V., Barth E., Krautwurst S., Furlan M., Pelizzola M., Marz M., Fornasiero E.F.
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
Nucleic Acids Research, vol. 52, (no. 6), pp. 2865-2885
DOI 10.1093/nar/gkae172
2024
Dermentzaki G., Furlan M., Tanaka I., Leonardi T., Rinchetti P., Passos P.M.S., Bastos A., Ayala Y.M., Hanna J.H., Przedborski S., Bonanomi D., Pelizzola M., Lotti F.
Depletion of Mettl3 in cholinergic neurons causes adult-onset neuromuscular degeneration
Cell Reports, vol. 43, (no. 4)
DOI 10.1016/j.celrep.2024.113999
Article Journal
2024
Zerbib J., Ippolito M.R., Eliezer Y., De Feudis G., Reuveni E., Savir Kadmon A., Martin S., Vigano S., Leor G., Berstler J., Muenzner J., Mulleder M., Campagnolo E.M., Shulman E.D., Chang T., Rubolino C., Laue K., Cohen-Sharir Y., Scorzoni S., Taglietti S., Ratti A., Stossel C., Golan T., Nicassio F., Ruppin E., Ralser M., Vazquez F., Ben-David U., Santaguida S.
Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage
Nature Communications, vol. 15, (no. 1)
DOI 10.1038/s41467-024-52176-x
2024
Pirra Piscazzi M., Marzi M.J., Nicassio F.
Multi-omic lineage tracing predicts the molecular drivers of cancer stem cells in Triple-Negative Breast Cancer evolution
PhD Thesis Book
2024
Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes-Bravo P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J.C., Nicassio F.
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
Nature Communications, vol. 15, (no. 1)
DOI 10.1038/s41467-024-51424-4
Article Journal
2024
Coscujuela Tarrero L., Fama V., D'Andrea G., Maestri S., de Polo A., Biffo S., Furlan M., Pelizzola M.
Nanodynamo quantifies subcellular RNA dynamics revealing extensive coupling between steps of the RNA life cycle
Nature Communications, vol. 15, (no. 1)
DOI 10.1038/s41467-024-51917-2
Article Journal
2024
Ugolini C., Leonardi T., Marzi M.J., Nicassio F.
NANOPORE SEQUENCING AS A NEW TOOL TO EXPLORE COMPLEX TRANSCRIPTOMES
PhD Thesis Book
2024
Champroux A., Tang Y., Dickson D.A., Meng A., Harrington A., Liaw L., Marzi M., Nicassio F., Schlaeger T.M., Feig L.A.
Transmission of reduced levels of miR-34/449 from sperm to preimplantation embryos is a key step in the transgenerational epigenetic inheritance of the effects of paternal chronic social instability stress
Epigenetics, vol. 19, (no. 1)
DOI 10.1080/15592294.2024.2346694
Article Journal
2023
Giambruno R., Zacco E., Ugolini C., Vandelli A., Mulroney L., DOnghia M., Giuliani B., Criscuolo E., Castelli M., Clementi N., Clementi M., Mancini N., Bonaldi T., Gustincich S., Leonardi T., Tartaglia G., Nicassio F.
Discovering host protein interactions specific for SARS-CoV-2 RNA genome
Molecular Therapy - Nucleic Acids
DOI 10.1101/2022.07.18.499583
Article in Press Journal
2023
Lattanzi G., Strati F., Diaz-Basabe A., Perillo F., Amoroso C., Protti G., Rita Giuffre M., Iachini L., Baeri A., Baldari L., Cassinotti E., Ghidini M., Galassi B., Lopez G., Noviello D., Porretti L., Trombetta E., Messuti E., Mazzarella L., Iezzi G., Nicassio F., Granucci F., Vecchi M., Caprioli F., Facciotti F.
iNKT cell-neutrophil crosstalk promotes colorectal cancer pathogenesis
Mucosal Immunology, vol. 16, (no. 3), pp. 326-340
DOI 10.1016/j.mucimm.2023.03.006
2023
Giuliani B., Tordonato C., Nicassio F.
Mechanisms of Long Non-Coding RNA in Breast Cancer
International Journal of Molecular Sciences, vol. 24, (no. 5)
DOI 10.3390/ijms24054538
2023
Champroux A., Yang T., Dickson D.A., Meng A., Harrington A., Liaw L., Marzi M., Nicassio F., Schlaeger T.M., Feig L. A.
Preimplantation Embryos Amplify Stress-Induced Changes in Sperm-Derived miRNA Content to Mediate Transgenerational Epigenetic Inheritance
bioRxiv
DOI 10.1101/2023.04.21.537854
Article E-print Archive
2023
Marzi M.J., Nadalin F., Pirra Piscazzi M., Fuentes P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J., Nicassio F.
Transcriptional and epigenetic landscape of breast cancer stem cells by single cell multiomics
EMBL Chromatin and epigenetics
Poster Conference

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