Publications
2023
Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J.C., Nicassio F.
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
bioRxiv
2023
De Silva N.S., Siewiera J., Alkhoury C., Nader G.P.F., Nadalin F., de Azevedo K., Couty M., Izquierdo H.M., Bhargava A., Conrad C., Maurin M., Antoniadou K., Fouillade C., Londono-Vallejo A., Behrendt R., Bertotti K., Serdjebi C., Lanthiez F., Gallwitz L., Saftig P., Herrero-Fernandez B., Saez A., Gonzalez-Granado J.M., van Niel G., Boissonnas A., Piel M., Manel N.
Nuclear envelope disruption triggers hallmarks of aging in lung alveolar macrophages
Nature Aging, vol. 3, (no. 10), pp. 1251-1268
2023
Brouiller F., Nadalin F., Bonte P.-E., Ait-Mohamed O., Delaugerre C., Lelievre J.-D., Ginhoux F., Ruffin N., Benaroch P.
Single-cell RNA-seq analysis reveals dual sensing of HIV-1 in blood Axl+ dendritic cells
iScience, vol. 26, (no. 2)
2023
Campbell I., Glinka M., Shaban F., Kirkwood K.J., Nadalin F., Adams D., Papatheodorou I., Burger A., Baldock R.A., Arends M.J., Din S.
The Promise of Single-Cell RNA Sequencing to Redefine the Understanding of Crohn’s Disease Fibrosis Mechanisms
Journal of Clinical Medicine, vol. 12, (no. 12)
2022
Oteri F., Sarti E., Nadalin F., Carbone A.
iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families
Nucleic Acids Research, pp. gkac481
2022
De Silva N., Nader G.P.F., Nadalin F., de Azevedo K., Couty M., Bhargava A., Conrad C., Maurin M., Fouillade C., Londono-Vallejo A., Behrendt R., Gallwitz L., Saftig P., Herrero Fernandez B., Gonzales-Granado J.M., Van Niel G., Boissonnas A., Piel M., Manel N.
Nuclear Envelope Disruption Triggers Hallmarks of Aging in Lung Alveolar Macrophages
SSRN Electronic Journal
Article
Journal
2022
Brouiller F., Nadalin F., Aït Mohamed O., Bonté P., Delaugerre C., Lelièvre J-D., Ginhoux F., Ruffin N., Benaroch P.
Single-cell RNA-Seq analysis reveals dual sensing of HIV-1 in blood Axl+ dendritic cells
bioRxiv
2021
Danko D., Bezdan D., Afshin E. E., Zhu S., Mso C.E., The International MetaSUB Consortium.
A global metagenomic map of urban microbiomes and antimicrobial resistance
Cell, vol. 184, pp. 1-18
2021
Döring M., De Azevedo K., Blanco-Rodriguez G., Nadalin F., Satoh T., Gentili M., Lahaye X., De Silva N.S., Conrad C., Jouve M., Centlivre M., Lévy Y., Manel N.
Single-cell analysis reveals divergent responses of human dendritic cells to the MVA vaccine
Science signaling, vol. 14, (no. 697), pp. eabd9720
2020
Teppa E., Nadalin F., Combet C., Zea D.J., David L., Carbone A.
Coevolution analysis of amino-acids reveals diversified drug-resistance solutions in viral sequences: A case study of hepatitis B virus
Virus Evolution, vol. 6, (no. 1)
2020
Chikina A. S., Nadalin F., Maurin M., San-Roman M., Thomas-Bonafos T., Li X. V., Lameiras S., Baulande S., Henri S., Malissen B., Mariano L. L., Barbazan J., Blander J. M., Iliev I. D., Matic Vignjevic D., Lennon-Duménil A-M.
Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption
Cell, vol. 183, pp. 411-428
2020
D'Amico F., Nadalin F., Libra M.
S100A7/Ran-binding protein 9 coevolution in mammals
Immunogenetics, vol. 72, (no. 3), pp. 155-164
2019
Gentili M., Lahaye X., Nadalin F., Nader G.P.F., Lombardi E.P., Herve S., De Silva N.S., Rookhuizen D.C., Zueva E., Goudot C., Maurin M., Bochnakian A., Amigorena S., Piel M., Fachinetti D., Londono-Vallejo A., Manel N.
Erratum: The N-Terminal Domain of cGAS Determines Preferential Association with Centromeric DNA and Innate Immune Activation in the Nucleus (Cell Reports (2019) 26(9) (2377–2393.e13), (S2211124719301421), (10.1016/j.celrep.2019.01.105))
Cell Reports, vol. 26, (no. 13)
2019
Gentili M., Lahaye X., Nadalin F., Nader G.F.P., Puig Lombardi E., Herve S., De Silva N.S., Rookhuizen D.C., Zueva E., Goudot C., Maurin M., Bochnakian A., Amigorena S., Piel M., Fachinetti D., Londono-Vallejo A., Manel N.
The N-Terminal Domain of cGAS Determines Preferential Association with Centromeric DNA and Innate Immune Activation in the Nucleus
Cell Reports, vol. 26, (no. 9), pp. 2377-2393.e13
2018
Douam F., Fusil F., Enguehard M., Dib L., Nadalin F., Schwaller L., Hrebikova G., Mancip J., Mailly L., Montserret R., Ding Q., Maisse C., Carlot E., Xu K., Verhoeyen E., Baumert T.F., Ploss A., Carbone A., Cosset F.-L., Lavillette D.
A protein coevolution method uncovers critical features of the Hepatitis C Virus fusion mechanism
PLoS Pathogens, vol. 14, (no. 3)